Goto

Collaborating Authors

 Marion County


Scalable Unit Harmonization in Medical Informatics via Bayesian-Optimized Retrieval and Transformer-Based Re-ranking

de la Torre, Jordi

arXiv.org Artificial Intelligence

Objective: To develop and evaluate a scalable methodology for harmonizing inconsistent units in large-scale clinical datasets, addressing a key barrier to data interoperability. Materials and Methods: We designed a novel unit harmonization system combining BM25, sentence embeddings, Bayesian optimization, and a bidirectional transformer based binary classifier for retrieving and matching laboratory test entries. The system was evaluated using the Optum Clinformatics Datamart dataset (7.5 billion entries). We implemented a multi-stage pipeline: filtering, identification, harmonization proposal generation, automated re-ranking, and manual validation. Performance was assessed using Mean Reciprocal Rank (MRR) and other standard information retrieval metrics. Results: Our hybrid retrieval approach combining BM25 and sentence embeddings (MRR: 0.8833) significantly outperformed both lexical-only (MRR: 0.7985) and embedding-only (MRR: 0.5277) approaches. The transformer-based reranker further improved performance (absolute MRR improvement: 0.10), bringing the final system MRR to 0.9833. The system achieved 83.39\% precision at rank 1 and 94.66\% recall at rank 5. Discussion: The hybrid architecture effectively leverages the complementary strengths of lexical and semantic approaches. The reranker addresses cases where initial retrieval components make errors due to complex semantic relationships in medical terminology. Conclusion: Our framework provides an efficient, scalable solution for unit harmonization in clinical datasets, reducing manual effort while improving accuracy. Once harmonized, data can be reused seamlessly in different analyses, ensuring consistency across healthcare systems and enabling more reliable multi-institutional studies and meta-analyses.


Knots: A Large-Scale Multi-Agent Enhanced Expert-Annotated Dataset and LLM Prompt Optimization for NOTAM Semantic Parsing

Liu, Maoqi, Fang, Quan, Yang, Yang, Zhao, Can, Cai, Kaiquan

arXiv.org Artificial Intelligence

Notice to Air Missions (NOTAMs) serve as a critical channel for disseminating key flight safety information, yet their complex linguistic structures and implicit reasoning pose significant challenges for automated parsing. Existing research mainly focuses on surface-level tasks such as classification and named entity recognition, lacking deep semantic understanding. To address this gap, we propose NOTAM semantic parsing, a task emphasizing semantic inference and the integration of aviation domain knowledge to produce structured, inference-rich outputs. To support this task, we construct Knots (Knowledge and NOTAM Semantics), a high-quality dataset of 12,347 expert-annotated NOTAMs covering 194 Flight Information Regions, enhanced through a multi-agent collaborative framework for comprehensive field discovery. We systematically evaluate a wide range of prompt-engineering strategies and model-adaptation techniques, achieving substantial improvements in aviation text understanding and processing. Our experimental results demonstrate the effectiveness of the proposed approach and offer valuable insights for automated NOTAM analysis systems. Our code is available at: https://github.com/Estrellajer/Knots.



A Appendix

Neural Information Processing Systems

Appendix contains more detailed explanations about datasets (A.1) and the experimental setup (A.2) We use a subset of HowTo100M to comply with Y outube's policies, which We do not use any labels from the datasets. We follow the same evaluation pipeline described in [1] and report the Recall at 10 (R@10). Although there exists a domain gap between images and the video datasets used for pre-training V A TT, we test the learned vision Transformer in the image domain. We will elaborate on this in the sequel. Both video and audio inputs are normalized between [-1, 1] for numerical stability.



Efficient Low Rank Gaussian Variational Inference for Neural Networks

Neural Information Processing Systems

Bayesian neural networks are enjoying a renaissance driven in part by recent advances in variational inference (VI). The most common form of VI employs a fully factorized or mean-field distribution, but this is known to suffer from several pathologies, especially as we expect posterior distributions with highly correlated parameters.


GyroSwin: 5D Surrogates for Gyrokinetic Plasma Turbulence Simulations

Paischer, Fabian, Galletti, Gianluca, Hornsby, William, Setinek, Paul, Zanisi, Lorenzo, Carey, Naomi, Pamela, Stanislas, Brandstetter, Johannes

arXiv.org Machine Learning

Nuclear fusion plays a pivotal role in the quest for reliable and sustainable energy production. A major roadblock to viable fusion power is understanding plasma turbulence, which significantly impairs plasma confinement, and is vital for next-generation reactor design. Plasma turbulence is governed by the nonlinear gyrokinetic equation, which evolves a 5D distribution function over time. Due to its high computational cost, reduced-order models are often employed in practice to approximate turbulent transport of energy. However, they omit nonlinear effects unique to the full 5D dynamics. To tackle this, we introduce GyroSwin, the first scalable 5D neural surrogate that can model 5D nonlinear gyrokinetic simulations, thereby capturing the physical phenomena neglected by reduced models, while providing accurate estimates of turbulent heat transport.GyroSwin (i) extends hierarchical Vision Transformers to 5D, (ii) introduces cross-attention and integration modules for latent 3D$\leftrightarrow$5D interactions between electrostatic potential fields and the distribution function, and (iii) performs channelwise mode separation inspired by nonlinear physics. We demonstrate that GyroSwin outperforms widely used reduced numerics on heat flux prediction, captures the turbulent energy cascade, and reduces the cost of fully resolved nonlinear gyrokinetics by three orders of magnitude while remaining physically verifiable. GyroSwin shows promising scaling laws, tested up to one billion parameters, paving the way for scalable neural surrogates for gyrokinetic simulations of plasma turbulence.




CountingFruit: Language-Guided 3D Fruit Counting with Semantic Gaussian Splatting

Li, Fengze, Liu, Yangle, Ma, Jieming, Liang, Hai-Ning, Shen, Yaochun, Li, Huangxiang, Wu, Zhijing

arXiv.org Artificial Intelligence

Accurate 3D fruit counting in orchards is challenging due to heavy occlusion, semantic ambiguity between fruits and surrounding structures, and the high computational cost of volumetric reconstruction. Existing pipelines often rely on multi-view 2D segmentation and dense volumetric sampling, which lead to accumulated fusion errors and slow inference. We introduce FruitLangGS, a language-guided 3D fruit counting framework that reconstructs orchard-scale scenes using an adaptive-density Gaussian Splatting pipeline with radius-aware pruning and tile-based rasterization, enabling scalable 3D representation. During inference, compressed CLIP-aligned semantic vectors embedded in each Gaussian are filtered via a dual-threshold cosine similarity mechanism, retrieving Gaussians relevant to target prompts while suppressing common distractors (e.g., foliage), without requiring retraining or image-space masks. The selected Gaussians are then sampled into dense point clouds and clustered geometrically to estimate fruit instances, remaining robust under severe occlusion and viewpoint variation. Experiments on nine different orchard-scale datasets demonstrate that FruitLangGS consistently outperforms existing pipelines in instance counting recall, avoiding multi-view segmentation fusion errors and achieving up to 99.7% recall on Pfuji-Size_Orch2018 orchard dataset. Ablation studies further confirm that language-conditioned semantic embedding and dual-threshold prompt filtering are essential for suppressing distractors and improving counting accuracy under heavy occlusion. Beyond fruit counting, the same framework enables prompt-driven 3D semantic retrieval without retraining, highlighting the potential of language-guided 3D perception for scalable agricultural scene understanding.